ATLAS Browser-Based Viewer

Editing Measurements

Click Here to Exit Measurements Editing Mode

You are using Internet Explorer

This application offers a better user experience if Mozilla Firefox or Google Chrome is used.

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Label

Position

Description

add point

move point

delete all

Hide all

Waypoint List

Distances
>>

Two waypoints or more are required to display the distance table.
All distances are in μm.

Information
>>

General Info

Name

11-300um

Beam Conditions

5.0 kV - 60.0 um HC

Detector

BSD

Dwell Time

5 μs

Rendered Pixel Size

5 nm

Caption

Mosaic Info

Native Width

89.77 μm

Native Height

84.96 μm

Exported Width

50 176 pixels

Exported Height

17 408 pixels

Total Size

873.46 Megapixels

Number of Tiles

Tile Width

17 952 pixels

Tile Height

16 989 pixels

Beam Info

10.48 mm

Reload

Measurement Tools
>>

Hide All

Edit

Delete

Delete All

Lock Measurements to FOV ?

Yes No

Holding CTRL while moving a node of any measurement tool will lock the tool angle to multiples of 15°.

Save / Load
>>

Save

Load

Save to XML

Delete existing data on load?

Yes No

Assign existing settings to loaded data?

Yes No

Save and restore the annotations, the views and the waypoints from the current browser session.

To save the current field of view, use the save button located in the footer of the application.

About ATLAS^TM
>>

About

Version 1.2.2141

Notice

The ATLAS Browser-Based Viewer will work with most web browsers.

This application exclusively uses Javascript, HTML5 and CSS3.

The ATLAS Browser-Based Viewer has been optimized for Google Chrome 7.0+.

Add View
Edit View
Delete All Views
Start Slide Show
Stop Slide Show
Add to Link List
Move View Forward
Move View Backward
Move View First
Move View Last

Daisy Chainclose

The current mosaic has been added to the daisy chain list.

To view the current list, press "Start Slide Show" in the ATLAS view menu.

Slide Showclose

Display each slide for second(s)

Mode

Auto Manual

Press "Enter" to change view

Display View Info ?	Yes No
Transition Mode	Zoom Out/In Panning None
Loop ?	Yes No
Daisy Chain Slide Show ?	Yes No

Slide Show Link List

Delete All

Get XML Code For Link List

If the slide shows are daisy chained, the following slide shows will be run sequentially.

Image Adjustmentclose

Brightness

Contrast

Apply

Reset

Saved Informationclose

The views, the measurements and the way points have been saved.

Exported Area Imageclose

The ATLAS Browser-Based Viewer cannot retreive the image when run locally.

If your are running Chrome locally, close all instances of Chrome and start it using :
chrome --allow-file-access-from-files

Settings

Include Measurements

Yes No

Refresh Image

If the image does not show or some tiles are missing, try pressing the refresh image button.

How to save the image

Right-Click on the image;
Select "Save Image As" ;
Choose a local destination.
Press "Save"

Image Parameters

Width
Height

Annotation Propertiesclose

Text

Annotation are limited to 200 chararacters.

Font Size
Font Family

Delete All Viewsclose

Please confirm you want to delete all the views

Scale Bar Valueclose

Please enter a scale bar value

μm

Scale Bar Type

Auto-Scale Fixed

Scalebar will be modified if the image scale is too large.

Please Fill in the Missing Dataclose

In order to work properly, the ATLAS Browser-Based Viewer needs to have the following data.

Native Pixel Size nm

Magnification Calibrationclose

Please measure the length of this red line with a ruler and input the value below.

Line Length

mm inch

Note: This calibration is monitor dependent.

Enter Magnificationclose

Enter the desired magnification to display.

MagnificationX

Enter Pixel Sizeclose

Enter the desired pixel size to display.

Pixel Sizenm

Zoom Level Not Optimalclose

It was detected that the current browser zoom level is different than 100%.

The ATLAS Browser-Based Viewer strongly recommends the browser to be set to 100%.

In most browser, pressing CTRL+0 will set the zoom level to 100%.

Do not show this warning again

Delete All Waypointsclose

Please confirm you want to delete all Waypoints

Delete All Measurementsclose

Please confirm you want to delete all measurements

View Informationclose

Name

Center		μm
Width / Height		μm

Description

Go To

Enter Image Scaleclose

Enter the desired image scale.

Scale value%

Enter Lengthclose

Lengthμm
Angle °

Hardware Accelerated Browserclose

It appears that the browser you are currently using is not hardware accelerated.

For an improved user experience it is strongly recommended to update your browser and/or to install any of the following browsers:

	Mozilla Firefox 4.0+
	Google Chrome 12+
	Apple Safari 5.0+
	Microsoft Internet Explorer 9+ for Windows Vista and 7 only

Do not show this warning again today

Enter Angleclose

Enter the desired angle

Angle°
Bring segments back together?

Enter Radiusclose

Enter the desired radius

Radiusμm

Enter Dimensionsclose

Enter the desired dimensions

Widthμm
Heightμm

Mosaic Captionclose

Mosaic Caption

Saved Imageclose

Cannot Save Image

An error has occured when trying to save the current view.

Settings

Include Measurements

Yes No

Refresh Image

If the image does not show or some tiles are missing, try pressing the refresh image button.

How to save the image

Right-Click on the image.
Select "Save Image As".
Choose a local destination.
Press "Save".

Image Info

Image Width		pixels
Image Height		pixels
Pixels		Megapixels

The image may have been shrunk to fit in this windows. It will be full size once saved.

Enter Image Widthclose

Enter the desired image width.

Image Widthμm

ATLAS Browser-Based Viewer Settingsclose

Measurements

Shape

Shape Color		Line Thickness
Outline Color

Text

Text Color		Font Size
Text Outline Color		Font

Solid Background ?

Yes No

Show Call-Out Tail ?

Yes No

Fill

Draw Fill ?

Yes No

Opacity

Show Angle for Length Measurements ?

Yes No

Views

Zoom Out Before Going to View ?

Yes No

Crosshair

Color

Line Thickness

Reset to Default Settings

Existing Data Will Be Deletedclose

Loading saved data will delete all the existing waypoints, views and measurements.

Do you want to continue ?

Save to XMLclose

The following code includes the waypoints, the annotations and the saved views.

Replace the WHOLE content of the mosaicinfo.js file located at with the following XML code.

Fatal Error!

You are using Internet Explorer

Waypoints
>>

Distances
>>

Information
>>

Measurement Tools
>>

Save / Load
>>

Settings
>>

About ATLAS^TM
>>

0 Views Stored

+ View

Views Menu

Add View

Edit View

Delete All Views

Start Slide Show

Stop Slide Show

Add to Link List

Move View Forward

Move View Backward

Move View First

Move View Last

Cannot Save Image

Fatal Error!

You are using Internet Explorer

Waypoints >>

Distances>>

Information>>

Measurement Tools>>

Save / Load>>

Settings>>

About ATLASTM>>

0 Views Stored + View Views Menu Add View Edit View Delete All Views Start Slide Show Stop Slide Show Add to Link List Move View Forward Move View Backward Move View First Move View Last

Waypoints
>>

Distances
>>

Information
>>

Measurement Tools
>>

Save / Load
>>

Settings
>>

About ATLAS^TM
>>

0 Views Stored

+ View

Views Menu

Add View

Edit View

Delete All Views

Start Slide Show

Stop Slide Show

Add to Link List

Move View Forward

Move View Backward

Move View First

Move View Last